Asia Pacific BioGRID Initiative

[ Home | APBioBox | APBioKnoppix | APBioKnoppix2 | BioWorldWideWorkflow | MDS Browser | Documentation | Download | Contact ]

APBioBox - Bioinformatics in a box!

APBioBox, Release 1.0, Beta1: RELEASE NOTES

Features

  1. Single meta-installer to install various software components.
  2. Integration of bio-app components with the grid middleware in directory service.
  3. Grid middleware customised for APBioGrid.
  4. Automatic registration of grid node and bio-app component info to the APBioGrid MDS at mds.apbionet.org
  5. Support two modes of installation for grid resource: register only or share mode.
  6. Workflow client based on KOOPlatform 3. Engine is installed using Java Webstart 1.4.2.

 

Issues/Known Problems/Future Features

  1. Installer does not detect/verify space requirements.
  2. Installer does not detect/verify login performing the installation.
  3. Emboss is not RPM'ised.
  4. Automated, remote capability to update the installed components.
  5. Installer currently does not detect and handle errors.
  6. A "superscript" wrapper as a prototype to utilise the integrated directory service and automated node selection for large jobs.
  7. The current KOOPlatform 3 may have problem if your JDK version is other than 1.4.1. JDK 1.4.2 is confirmed to have problem with the Java Webstart.
  8. Installer does not handle installation of overlapping/repeated RPMs.
  9. Access mechanism to bio-databases.
  10. BioMirror-Installer to allow user to select the database to install.


Updated Oct; July; Apr 2004; 4 Dec 2003 (ttw); 16 Sep 2003 - ogs